GDC Data Portal: Data from several cancer studies (including TCGA)
gnoMAD: aggregation of exome and genome sequencing data from unrelated individuals to assess allele frequencies across populations.
GTEX Portal: The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation.
DoCM: Database of Curated Mutations
Cancer Genetics Web: Gene-mutation database
COSMIC: Catalogue of Somatic Mutations in Cancer
ClinVar: Genomic variation + human health
Harmonize: Integrated knowledge about genes and proteins. Helpful for expression of various genes in cell lines.
GDC Data Portal: Bam, bam slice, clinical info, other important info for TCGA samples
cBioPortal: The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.
GEPIC: Gene expression profiling interactive analysis
Pancan Atlas Publication Data: RNA, RPPA, Methylation, miRNA, Copy Number, Mutations, Clinical Data, Pathway etc.
Xena Functional Genomics Explorer: explore functional genomic datasets for correlations between genomic and/or phenotypic variables - includes TCGA, GTEX
ExPASY: Bioinformatics Resource Portal
Cancer Genome Interpreter: cancer drivers + genomic biomarkers
Drug Bank: A unique bioinformatics and cheminformatics resource that combines detailed drug data with comprehensive drug target information.
Uniprot: provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information.
RCSB Protein Data Bank: an information portal to biological macromolecular structures
RBPmap: Mapping binding sites of RNA Binding Proteins.
SFmap: Motifs analysis and prediction of splicing factors.
MotifMAP-RNA: Comprehensive maps of candidate regulatory elements (RBPs binding sites etc). + ChIP-Seq data
SpliceAid2: a database of human splicing factors expression data and RNA target motifs
SpliceAidF: a dabase of human splicing factors and their binding sites (2013)